miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|268293429|gb|GT444610.1|GT444610 GGGGGACTTAACGAAAGTTAAAAACTTCCTGAGTCATCAGCGACCAGCAAACAAGTACGACTAGTACGAGCCAAAGACAT
ACATAGACCAGTTTTATCAGTCAATAGTTGTGTGTTTTGTGTTTTTACTCATTTTACTGCTTTTAAGTTCAGTTGGTTCA
TATGGTCGCTTTTGGTACCAACGAGTGCGAATATGTCCGAATACATCGACTACGGTTGGAGGAATAACGACTTATTCAGC
AAATCGATCAACAAAACCTTCTACAAGAACCTCACCGCAACTGATAGGGAAGTGGCCATCAAAGCTCTAAGGAACGTGAT
AAAAAGTTGCGGCGACATCGAATTCAAAAATCACATAGAGCAAGATGAGAAGACGCTCCAAAAGTTCCTCTTTGCCCGAA
AGTTTATACTGGAGGACAGTTTTGAGACGTTGAAAAACTTTTACTGGTACAGGAAACGGAATCCGGATATTTTTCGCGAT
TTAAATTTGGACTCTGCTGATGTACGGAAGGCACTAGAAAATGGACTACCAGGTGTACTAAAGGACAAGGACCGAAAGGG
GCGATGTGTGTTACTTTTAACTGCAAACAACTGGGATTGCAGTTACAGCCTGCTAAGCATATACAGGGCGATGTTGGTAT
GTTTGGAACAAGTAACGAACGATTTGCACAATCAAGCCAATGGGGTGGTGGTCATTGTGGATTGGACCGAGTTTTCGTAT
AAACAAACGTCCCATTTGAAACCTTCAATTTTAAGACTGATGATCGAAGGAC




Most similar to sp|Q5M7E1|CLVS1_XENLA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q5M7E1|CLVS1_XENLA Clavesin-1 OS=Xenopus laevis GN=clvs1 PE=2
           SV=1
          Length = 332

 Score =  126 bits (316), Expect = 2e-28
 Identities = 69/159 (43%), Positives = 103/159 (64%), Gaps = 1/159 (0%)
 Frame = +1

Query: 298 IKALRNVIKSCGDIEFKNHIEQDEKTLQKFLFARKFILEDSFETLKNFYWYRKRNPDIFR 477
           I+ +R++I +  DI F   +  D+  + +FL ARKF   ++F  L  ++ YR+ N D+F+
Sbjct: 31  IQQVRDMIITRPDIGF---LRTDDAFILRFLRARKFNQMEAFRLLAQYFQYRQLNLDMFK 87

Query: 478 DLNLDSADVRKALENGLPGVLKDKDRKGRCVLLLTANNWDCS-YSLLSIYRAMLVCLEQV 654
           +L  D   +++AL +G PGVL+++D  GR +LLL A NWD S  S + I RA+L+ LE +
Sbjct: 88  NLKADDPGIKRALMDGFPGVLENRDHYGRKILLLFAANWDQSRNSFVDILRAILLSLEVL 147

Query: 655 TNDLHNQANGVVVIVDWTEFSYKQTSHLKPSILRLMIEG 771
             D   Q NG ++I+DW+ FS+KQ S L PSILRL IEG
Sbjct: 148 IEDQELQINGFILIIDWSNFSFKQASKLTPSILRLAIEG 186